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<font face="monospace">Hi Mikko,<br>
<br>
Thanks for the quick response.<br>
<br>
I have a full day of meetings about to start, but very quickly:<br>
<br>
<blockquote type="cite">does the output window give many "energy
would change too much in the virtual detector" -notifications?</blockquote>
it gives some yes, but hard for me to say if this is "many"
though.<br>
The below is a sample of the output when running with just one
processor. "ions observed" remains zero throughout.<br>
<br>
<i><font size="1">Presimulation finished<br>
Calculated 0 of 1000000 ions (0%)<br>
Calculated 10000 of 1000000 ions (1%)<br>
Calculated 20000 of 1000000 ions (2%)<br>
Calculated 30000 of 1000000 ions (3%)<br>
Calculated 40000 of 1000000 ions (4%)<br>
Calculated 50000 of 1000000 ions (5%)<br>
Calculated 60000 of 1000000 ions (6%)<br>
Calculated 70000 of 1000000 ions (7%)<br>
Calculated 80000 of 1000000 ions (8%)<br>
Calculated 90000 of 1000000 ions (9%)<br>
Energy would change too much in virtual detector<br>
Energy would change too much in virtual detector 1.713
MeV<br>
Energy would change too much in virtual detector -0.871
MeV<br>
Energy would change too much in virtual detector<br>
Calculated 100000 of 1000000 ions (10%)<br>
Energy would change too much in virtual detector<br>
Calculated 110000 of 1000000 ions (11%)<br>
Calculated 120000 of 1000000 ions (12%)<br>
Calculated 130000 of 1000000 ions (13%)<br>
Calculated 140000 of 1000000 ions (14%)<br>
Energy would change too much in virtual detector<br>
Calculated 150000 of 1000000 ions (15%)<br>
Energy would change too much in virtual detector<br>
Calculated 160000 of 1000000 ions (16%)<br>
Calculated 170000 of 1000000 ions (17%)<br>
Calculated 180000 of 1000000 ions (18%)<br>
Calculated 190000 of 1000000 ions (19%)<br>
Energy would change too much in virtual detector -1.114
MeV<br>
Energy would change too much in virtual detector<br>
Calculated 200000 of 1000000 ions (20%)<br>
Calculated 210000 of 1000000 ions (21%)<br>
Energy would change too much in virtual detector<br>
Calculated 220000 of 1000000 ions (22%)<br>
Calculated 230000 of 1000000 ions (23%)<br>
.....<br>
</font></i><br>
<blockquote type="cite">
<div class="elementToProof">a) If you want you could possibly
sent the project file to me to look it closer..or possibly
faste option forward:<br>
</div>
<div class="elementToProof">b) Second option could already be:
the sneak peak for the next potku release which is about just
to emerge.
</div>
</blockquote>
If will try option b) as a first attempt, as I am also quite eager
to see the new version anyway. <br>
If this fails I will send you the project folder, this won't be
until later this evening though (due to meetings).<br>
<br>
<blockquote type="cite">Our university web pages have just went
through large refreshment, and some "old" pages cannot be
accessed at the moment, Potku page included.</blockquote>
Yes, I noticed this a couple of days ago. <br>
Our pages are due a refresh very soon too, so I am waiting to
experience similar problems here haha<br>
<br>
<br>
<br>
I'll let you know how I get on.<br>
/Rob<br>
<br>
<br>
</font>
<div class="moz-signature"><b>Robert Frost MEng PhD </b><br>
Researcher in the Ion-physics Group<br>
Division of Applied Nuclear Physics<br>
Department of Physics & Astronomy<br>
Uppsala University<br>
Sweden<br>
email: <a class="moz-txt-link-abbreviated" href="mailto:rob.frost@physics.uu.se">rob.frost@physics.uu.se</a><br>
phone: +46 (0) 723411586<br>
<br>
<br>
</div>
<div class="moz-cite-prefix">On 09/11/2023 08:24, Laitinen, Mikko
wrote:<br>
</div>
<blockquote type="cite"
cite="mid:AS8PR05MB102955B38BA4644058C8D49AFA3AFA@AS8PR05MB10295.eurprd05.prod.outlook.com">
<meta http-equiv="Content-Type" content="text/html; charset=UTF-8">
<style type="text/css" style="display:none;">P {margin-top:0;margin-bottom:0;}</style>
<div class="elementToProof">Good morning Robert, All Potku users,<br>
</div>
<div><br>
</div>
<div class="elementToProof">All the parameters in the screenshots
seems ok for the MCERD simulations, at first glimpse.<br>
</div>
<div><br>
</div>
<div class="elementToProof">However, does the output window give
many "energy would change too much in the virtual detector"
-notifications?, and by a lot I mean thats only it gives? (one
could try only single processor to test the re-occurrence too?)<br>
</div>
<div class="elementToProof">Example text:<br>
</div>
<div class="elementToProof"><img style="max-width:100%"
class="ContentPasted0 w-564 h-48" size="5898"
contenttype="image/png" data-outlook-trace="F:1|T:1"
src="cid:part1.JaZHLtwn.zY59L71z@physics.uu.se"><br>
</div>
<div><br>
</div>
<div class="elementToProof">This kind of "no ions" would be the
'typical' case for hydrogen, for example, if the minimum energy
is set to "1 MeV". This is because the minimum energy needs to
be about half the smaller than the actual ion energy one wants
to simulate/match. But, this should not be the issue now for the
Aluminum. At the moment, I dont recall this issue, or the
solution to this.<br>
</div>
<div><br>
</div>
<div>---<br>
</div>
<div class="elementToProof">a) If you want you could possibly sent
the project file to me to look it closer..or possibly faste
option forward:<br>
</div>
<div class="elementToProof">b) Second option could already be: the
sneak peak for the next potku release which is about just to
emerge.
<br>
</div>
<div>This can be found from Github already for win, mac and linux:<br>
</div>
<div><a class="moz-txt-link-freetext" href="https://github.com/JYU-IBA/potku/releases/tag/2.2.0">https://github.com/JYU-IBA/potku/releases/tag/2.2.0</a><br>
</div>
<div><br>
</div>
<div>In this version, there's still few known issues (have been
fixed up mostly), like<br>
</div>
<div>1) in some simulation related crash, the previous data cannot
be opened <br>
</div>
<div class="elementToProof">2) changing the fluence in simulations
prompts "simulations need to be re-done"<br>
</div>
<div>3) few minor issues<br>
</div>
<div><br>
</div>
<div class="elementToProof">But once those are also fixed, next
week?, I will announce this more "officially".<br>
</div>
<div class="elementToProof">(Note: if one opens the project with
the new version, then old potku cannot anymore open the same
project. (to preserve the possibility for previous version, open
for example a copied project instead). The configuration files
are now JSON format and introduction of the energy detector
(addition to the TOF) have introduced new parameters, for
example. But the new version is otherways wayy ahead of the old
2022/03/31 version, including also many speed and usability
improvements to the slab analysis side).<br>
</div>
<div><br>
</div>
<div>mikko.<br>
</div>
<div><br>
</div>
<div>ps. Our university web pages have just went through large
refreshment, and some "old" pages cannot be accessed at the
moment, Potku page included..<br>
</div>
<div><br>
</div>
<div><br>
</div>
<div>--<br>
</div>
<div>Mikko Laitinen, PhD, Docent<br>
</div>
<div>Academy Research Fellow<br>
</div>
<div>Department of Physics, Accelerator Laboratory<br>
</div>
<div>________________________________________________________<br>
</div>
<div>Postal address: University of Jyväskylä,<br>
</div>
<div>Department of Physics, P.O. Box 35, FI-40014, Finland<br>
</div>
<div>Street address: Survontie 9 D, Ylistönrinne, Jyväskylä<br>
</div>
<div>Work phone: +358 40 8054 113<br>
</div>
<div>E-mail address: <a class="moz-txt-link-abbreviated" href="mailto:mikko.i.laitinen@jyu.fi">mikko.i.laitinen@jyu.fi</a><br>
</div>
<div><br>
</div>
<div>________________________________________<br>
</div>
<div>From: <a class="moz-txt-link-abbreviated" href="mailto:potku-bounces@lists.jyu.fi">potku-bounces@lists.jyu.fi</a>
<a class="moz-txt-link-rfc2396E" href="mailto:potku-bounces@lists.jyu.fi"><potku-bounces@lists.jyu.fi></a> on behalf of Robert Frost
<a class="moz-txt-link-rfc2396E" href="mailto:rob.frost@physics.uu.se"><rob.frost@physics.uu.se></a><br>
</div>
<div>Sent: Wednesday, November 8, 2023 8:56 PM<br>
</div>
<div>To: <a class="moz-txt-link-abbreviated" href="mailto:potku@lists.jyu.fi">potku@lists.jyu.fi</a><br>
</div>
<div>Subject: [POTKU] no observed ions in Potku simultion<br>
</div>
<div><br>
</div>
<div>Hi,<br>
</div>
<div><br>
</div>
<div>I'm currently trying to make use of the simulation tool in
Potku, but the number of "observed ions" simply remains zero
(screenshot below and also attached).<br>
</div>
<div><br>
</div>
<div>Screenshots of all related setting are also included below
(and attached).<br>
</div>
<div><br>
</div>
<div>Any idea what I am doing wrong?<br>
</div>
<div><br>
</div>
<div>Thanks,<br>
</div>
<div>Rob<br>
</div>
<div><br>
</div>
<div><br>
</div>
<div>[<a class="moz-txt-link-freetext" href="cid:part1.MkUxBdPx.0PguyRlK@physics.uu.se">cid:part1.MkUxBdPx.0PguyRlK@physics.uu.se</a>]<br>
</div>
<div><br>
</div>
<div>[<a class="moz-txt-link-freetext" href="cid:part2.vDtaBxso.6uatLmkj@physics.uu.se">cid:part2.vDtaBxso.6uatLmkj@physics.uu.se</a>][<a class="moz-txt-link-freetext" href="cid:part3.3TiaTmrf.QiKjpHa8@physics.uu.se">cid:part3.3TiaTmrf.QiKjpHa8@physics.uu.se</a>][<a class="moz-txt-link-freetext" href="cid:part4.dMj3EZ45.NrrWraD4@physics.uu.se">cid:part4.dMj3EZ45.NrrWraD4@physics.uu.se</a>]<br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div>--<br>
</div>
<div>Robert Frost MEng PhD<br>
</div>
<div>Researcher in the Ion-physics Group<br>
</div>
<div>Division of Applied Nuclear Physics<br>
</div>
<div>Department of Physics & Astronomy<br>
</div>
<div>Uppsala University<br>
</div>
<div>Sweden<br>
</div>
<div>email:
<a class="moz-txt-link-abbreviated" href="mailto:rob.frost@physics.uu.se">rob.frost@physics.uu.se</a><a class="moz-txt-link-rfc2396E" href="mailto:rob.frost@physics.uu.se"><mailto:rob.frost@physics.uu.se></a><br>
</div>
<div>phone: +46 (0) 723411586<br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
<div><br>
</div>
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